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Models of nucleotide substitution

ZIHENG YANG

in Computational Molecular Evolution

Published in print:
2006
Published Online:
April 2010
ISBN:
9780198567028
eISBN:
9780191728280
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198567028.003.0001
Subject:
Biology, Evolutionary Biology / Genetics

This chapter discusses models of nucleotide substitution and calculation of the distance between a pair of sequences. It introduces the theory of Markov chains and the maximum likelihood method, ... More


Models and mechanisms of visual masking: a selective review and comparison

Bruno G. Breitmeyer and Haluk ÖĞmen

in Visual Masking: Time slices through conscious and unconscious vision

Published in print:
2006
Published Online:
April 2010
ISBN:
9780198530671
eISBN:
9780191728204
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198530671.003.0004
Subject:
Psychology, Cognitive Psychology

This chapter presents models and mechanisms of masking according to five distinguishing characteristics: (i) models based on spatiotemporal response sequences; (ii) models adopting some version of an ... More


Monte Carlo computational approaches in Bayesiancodon-substitution modelling

Nicolas Rodrigue and Nicolas Lartillot

in Codon Evolution: Mechanisms and Models

Published in print:
2012
Published Online:
May 2015
ISBN:
9780199601165
eISBN:
9780191810114
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:osobl/9780199601165.003.0004
Subject:
Biology, Evolutionary Biology / Genetics

This chapter reviews Markov Chain Monte Carlo (MCMC) approaches in codon-substitution modelling. It outlines the process of data analysis using the Bayesian framework. It describes the algorithms for ... More


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