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Dealing with model uncertainty in reconstructing ancestral proteins in the laboratory: examples from archosaur visual pigments and coralfluorescent proteins

Belinda S.W. Chang, Mikhail V. Matz, Steven F. Field, Johannes Müller, and Ilke van Hazel

in Ancestral Sequence Reconstruction

Published in print:
2007
Published Online:
September 2008
ISBN:
9780199299188
eISBN:
9780191714979
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199299188.003.0015
Subject:
Biology, Evolutionary Biology / Genetics

This chapter discusses efficient experimental strategies to explore variation in ancestral sequence reconstructions. The experimental strategies are illustrated with two examples, ancestral ... More


Photosynthesis and the Great Salt Lake

Pete A. Ensminger

in Life Under the Sun

Published in print:
2001
Published Online:
October 2013
ISBN:
9780300088045
eISBN:
9780300133523
Item type:
chapter
Publisher:
Yale University Press
DOI:
10.12987/yale/9780300088045.003.0015
Subject:
Environmental Science, Climate

This chapter discusses the diversity of life, its classification into Eukarya, Eubacteria, and Archaea and their evolutionary relationships. It further investigates Halobacterium salinarum, which ... More


The future of codon models in studies of molecular function: ancestral reconstruction and clade models of functional divergence

Belinda S. W. Chang, Jingjing Du, Cameron J. Weadick, Johannes Müller, Constanze Bickelmann, D. David Yu, and James M. Morrow

in Codon Evolution: Mechanisms and Models

Published in print:
2012
Published Online:
May 2015
ISBN:
9780199601165
eISBN:
9780191810114
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:osobl/9780199601165.003.0011
Subject:
Biology, Evolutionary Biology / Genetics

This chapter focuses on the use of codon models for ancestral sequence reconstruction, and for use in clade models of functional divergence. It first reviews codon-based ancestral reconstruction ... More


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