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Rearrangement Phylogenies

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0014
Subject:
Mathematics, Mathematical Biology

This chapter presents models to handle signed permutations of the same set of elements. It covers the large parsimony problem; the large parsimony problem with gene orders; and heuristics for the ... More


Median and Halving Problems

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0013
Subject:
Mathematics, Mathematical Biology

This chapter presents models for median and halving problems. It covers the breakpoint median; reversal and DCJ median problems; duplicated genomes; and other variants and generalizations.


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