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Parsimony, Phylogeny, and Genomics

Victor A. Albert (ed.)

Published in print:
2006
Published Online:
September 2007
ISBN:
9780199297306
eISBN:
9780191713729
Item type:
book
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199297306.001.0001
Subject:
Biology, Evolutionary Biology / Genetics

Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover, it has mathematical ... More


Reconstruction of ancestral proteomes

Toni Gabaldón and Martijn A. Huynen

in Ancestral Sequence Reconstruction

Published in print:
2007
Published Online:
September 2008
ISBN:
9780199299188
eISBN:
9780191714979
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199299188.003.0012
Subject:
Biology, Evolutionary Biology / Genetics

The process of inferring the set of proteins that was likely encoded in the genome of an extinct organism is called Ancestral Proteome Reconstruction. This process usually involves the comparison of ... More


Assembling the spiralian tree of life

Gonzalo Giribet, Casey W. Dunn, Gregory D. Edgecombe, Andreas Hejnol, Mark Q. Martindale, and Greg W. Rouse

in Animal Evolution: Genomes, Fossils, and Trees

Published in print:
2009
Published Online:
September 2009
ISBN:
9780199549429
eISBN:
9780191721601
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199549429.003.0006
Subject:
Biology, Evolutionary Biology / Genetics, Developmental Biology

The advent of numerical methods for analyzing phylogenetic relationships, along with the study of morphology and molecular data, have driven our understanding of animal relationships for the past ... More


Invertebrate Problematica: kinds, causes, and solutions

Ronald A. Jenner, D. Timothy, and J. Littlewood

in Animal Evolution: Genomes, Fossils, and Trees

Published in print:
2009
Published Online:
September 2009
ISBN:
9780199549429
eISBN:
9780191721601
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199549429.003.0011
Subject:
Biology, Evolutionary Biology / Genetics, Developmental Biology

Problematica are taxa that defy robust phylogenetic placement. Traditionally the term was restricted to fossil forms, but it is clear that extant taxa may be just as difficult to place, whether using ... More


Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

Nicolas Lartillot and Hervé Philippe

in Animal Evolution: Genomes, Fossils, and Trees

Published in print:
2009
Published Online:
September 2009
ISBN:
9780199549429
eISBN:
9780191721601
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199549429.003.0012
Subject:
Biology, Evolutionary Biology / Genetics, Developmental Biology

Inferring the relationships among Bilateria has been an active and controversial research area since Haeckel. The lack of a sufficient number of phylogenetically reliable characters was the main ... More


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