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Comparison of methods and tests on trees

ZIHENG YANG

in Computational Molecular Evolution

Published in print:
2006
Published Online:
April 2010
ISBN:
9780198567028
eISBN:
9780191728280
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198567028.003.0006
Subject:
Biology, Evolutionary Biology / Genetics

This chapter discusses two problems: the evaluation of statistical properties of tree reconstruction methods and tests of the significance of estimated phylogenies. Section 6.1 discusses criteria for ... More


The limits of conventional cladistic analysis

Jerrold I. Davis, Kevin C. Nixon, and Damon P. Little

in Parsimony, Phylogeny, and Genomics

Published in print:
2006
Published Online:
September 2007
ISBN:
9780199297306
eISBN:
9780191713729
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199297306.003.0007
Subject:
Biology, Evolutionary Biology / Genetics

Software for cladistic analysis has been widely available for more than twenty years, and a series of advances made during this time have facilitated the analysis of matrices of ever-increasing size. ... More


Phylogeny reconstruction: overview

ZIHENG YANG

in Computational Molecular Evolution

Published in print:
2006
Published Online:
April 2010
ISBN:
9780198567028
eISBN:
9780191728280
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198567028.003.0003
Subject:
Biology, Evolutionary Biology / Genetics

This chapter provides an overview of phylogeny reconstruction methods. It introduces some basic concepts used to describe trees and discusses general features of tree-reconstruction methods. Distance ... More


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