Curtis L. Meinert and Susan Tonascia
- Published in print:
- 1986
- Published Online:
- September 2009
- ISBN:
- 9780195035681
- eISBN:
- 9780199864478
- Item type:
- chapter
- Publisher:
- Oxford University Press
- DOI:
- 10.1093/acprof:oso/9780195035681.003.0017
- Subject:
- Public Health and Epidemiology, Public Health, Epidemiology
This chapter discusses the issues involved in the development and maintenance of the analysis database. Topics covered include choice of computing facility, organization of programming resources, ...
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This chapter discusses the issues involved in the development and maintenance of the analysis database. Topics covered include choice of computing facility, organization of programming resources, operational requirements for database maintenance, data security precautions, filing and storing the original study records, and preparation of analysis tapes.Less
This chapter discusses the issues involved in the development and maintenance of the analysis database. Topics covered include choice of computing facility, organization of programming resources, operational requirements for database maintenance, data security precautions, filing and storing the original study records, and preparation of analysis tapes.
Peter S. Curtis, Kerrie Mengersen, Marc J. Lajeunesse, Hannah R. Rothstein, and Gavin B. Stewart
- Published in print:
- 2013
- Published Online:
- October 2017
- ISBN:
- 9780691137285
- eISBN:
- 9781400846184
- Item type:
- chapter
- Publisher:
- Princeton University Press
- DOI:
- 10.23943/princeton/9780691137285.003.0005
- Subject:
- Biology, Ecology
This chapter discusses the data extraction process, meta-analysis database, and critical appraisal of data. The efficient and accurate extraction of data from primary studies is an important ...
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This chapter discusses the data extraction process, meta-analysis database, and critical appraisal of data. The efficient and accurate extraction of data from primary studies is an important component of successful research reviews. It is one of the most time-consuming parts of a research review and should be approached with the goal of repeatability and transparency of results. Careful definition of the research question and identification of the effect size metric(s) to be used are prerequisites to efficient data extraction. The extraction spreadsheet may simply be appended to a growing database stored in a single spreadsheet (also known as “flat file database”) (e.g., Microsoft Excel, Lotus, Quattro Pro), but it may be advantageous to develop relational databases (e.g., by using Microsoft Access, Paradox or dBase software), particularly for large or complex data. During the process of data extraction the investigator also has an opportunity for critical appraisal of data quality. One approach to quantitative assessment of study quality has been the use of numerical scales in which points are assigned to specific elements of the study and summed to produce an overall quality score.Less
This chapter discusses the data extraction process, meta-analysis database, and critical appraisal of data. The efficient and accurate extraction of data from primary studies is an important component of successful research reviews. It is one of the most time-consuming parts of a research review and should be approached with the goal of repeatability and transparency of results. Careful definition of the research question and identification of the effect size metric(s) to be used are prerequisites to efficient data extraction. The extraction spreadsheet may simply be appended to a growing database stored in a single spreadsheet (also known as “flat file database”) (e.g., Microsoft Excel, Lotus, Quattro Pro), but it may be advantageous to develop relational databases (e.g., by using Microsoft Access, Paradox or dBase software), particularly for large or complex data. During the process of data extraction the investigator also has an opportunity for critical appraisal of data quality. One approach to quantitative assessment of study quality has been the use of numerical scales in which points are assigned to specific elements of the study and summed to produce an overall quality score.
Marcelo M. Rivadeneira and Gary C.B. Poore
- Published in print:
- 2020
- Published Online:
- January 2021
- ISBN:
- 9780190637842
- eISBN:
- 9780197538265
- Item type:
- chapter
- Publisher:
- Oxford University Press
- DOI:
- 10.1093/oso/9780190637842.003.0015
- Subject:
- Biology, Evolutionary Biology / Genetics
The latitudinal diversity gradient (LDG) is a phenomenon acknowledged for over two centuries. The LDG of marine crustaceans has been studied often but without reaching consensus on its ultimate ...
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The latitudinal diversity gradient (LDG) is a phenomenon acknowledged for over two centuries. The LDG of marine crustaceans has been studied often but without reaching consensus on its ultimate causative processes. We have undertaken a new synthesis to assess the generality of the LDG and evaluated how potential sampling and other biases, spatial scale, geographic regions, taxonomic aggregation, and differences between clades affect patterns. A meta-analysis of 186 datasets, encompassing 20 studies and 7 crustacean orders, revealed a strong effect size of the species richness-latitude correlation, supporting the existence of a “canonical” LDG. The effect size was sensitive to spatial scale, with studies conducted over shorter latitudinal ranges tending to show a weaker LDG. Correcting for sampling biases in the number of occurrences, taxonomic completeness and spatial heterogeneity did not affect the strength of the LDG, nor did the degree of taxonomic aggregation; effect sizes were similar at family and ordinal levels. However, between orders effect sizes varied strongly, with peracarid orders (Amphipoda, Cumacea, Isopoda) showing a weaker or inverse LDG compared with non-peracarid orders (Calanoida, Euphausiacea, Decapoda, Sessilia). Additional analyses based on a global dataset of >2 million occurrences of >13,000 species revealed patterns undetected by the meta-analysis, including: (1) the existence of a marked bi-modal LDG, with peaks of diversity in subtropical areas (Calanoidea, Decapoda, Sessilia) and in temperate areas (Amphipoda, Isopoda), (2) interhemispheric asymmetry, variable across groups and depths, and (3) ocean basin differences in the shape of the LDG, dependent on taxonomic clade. Both ecological and evolutionary processes play a part. The fossil record of Decapoda showed that its global canonical LDG can be explained by median and range of the age of genera, i.e., hotspots of diversity harbor both younger and older genera and contain a high proportion of genera originating during the Paleogene. In addition, the effect size was negatively related to family age, the LDG being stronger in older families of early Cenozoic and Mesozoic origin. Modes of larval development also played a significant part, taxa without planktonic larvae having weaker or inverse LDG compared with taxa with pelagic larvae. Because clades with direct development tend to show smaller bathymetric and latitudinal ranges than those with pelagic larvae, differences in diversification rates may be implied. Overall, our evidence suggested that the ultimate causes of the LDG are deeply tied to geographic differences in macro-evolutionary rates, i.e., greater rates of species origin and lower rates of extinction in the tropics than in higher latitudes combined with a strong tropical niche conservatism.Less
The latitudinal diversity gradient (LDG) is a phenomenon acknowledged for over two centuries. The LDG of marine crustaceans has been studied often but without reaching consensus on its ultimate causative processes. We have undertaken a new synthesis to assess the generality of the LDG and evaluated how potential sampling and other biases, spatial scale, geographic regions, taxonomic aggregation, and differences between clades affect patterns. A meta-analysis of 186 datasets, encompassing 20 studies and 7 crustacean orders, revealed a strong effect size of the species richness-latitude correlation, supporting the existence of a “canonical” LDG. The effect size was sensitive to spatial scale, with studies conducted over shorter latitudinal ranges tending to show a weaker LDG. Correcting for sampling biases in the number of occurrences, taxonomic completeness and spatial heterogeneity did not affect the strength of the LDG, nor did the degree of taxonomic aggregation; effect sizes were similar at family and ordinal levels. However, between orders effect sizes varied strongly, with peracarid orders (Amphipoda, Cumacea, Isopoda) showing a weaker or inverse LDG compared with non-peracarid orders (Calanoida, Euphausiacea, Decapoda, Sessilia). Additional analyses based on a global dataset of >2 million occurrences of >13,000 species revealed patterns undetected by the meta-analysis, including: (1) the existence of a marked bi-modal LDG, with peaks of diversity in subtropical areas (Calanoidea, Decapoda, Sessilia) and in temperate areas (Amphipoda, Isopoda), (2) interhemispheric asymmetry, variable across groups and depths, and (3) ocean basin differences in the shape of the LDG, dependent on taxonomic clade. Both ecological and evolutionary processes play a part. The fossil record of Decapoda showed that its global canonical LDG can be explained by median and range of the age of genera, i.e., hotspots of diversity harbor both younger and older genera and contain a high proportion of genera originating during the Paleogene. In addition, the effect size was negatively related to family age, the LDG being stronger in older families of early Cenozoic and Mesozoic origin. Modes of larval development also played a significant part, taxa without planktonic larvae having weaker or inverse LDG compared with taxa with pelagic larvae. Because clades with direct development tend to show smaller bathymetric and latitudinal ranges than those with pelagic larvae, differences in diversification rates may be implied. Overall, our evidence suggested that the ultimate causes of the LDG are deeply tied to geographic differences in macro-evolutionary rates, i.e., greater rates of species origin and lower rates of extinction in the tropics than in higher latitudes combined with a strong tropical niche conservatism.