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Modeling the Genomic Evolution of Gene Contents

Xun Gu

in Statistical Theory and Methods for Evolutionary Genomics

Published in print:
2010
Published Online:
January 2011
ISBN:
9780199213269
eISBN:
9780191594762
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199213269.003.0009
Subject:
Biology, Biomathematics / Statistics and Data Analysis / Complexity Studies

Whole-genome analysis, e.g., the presence or absence of gene families over multiple genomes, is becoming an attractive approach for extracting the bulk phylogenetic signals and exploring the pattern ... More


Contentious Connections in Great Britain, 1828–34

Charles Tilly and Lesley J. Wood

in Social Movements and Networks: Relational Approaches to Collective Action

Published in print:
2003
Published Online:
November 2003
ISBN:
9780199251780
eISBN:
9780191599057
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/0199251789.003.0007
Subject:
Political Science, Comparative Politics

Combines network analysis and historical sociology to chart significant changes in patterns of social conflict (in particular, relationships of attack and claim making) among different social groups, ... More


Distances between Arbitrary Strings

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0008
Subject:
Mathematics, Mathematical Biology

This chapter presents two main ideas to deal with arbitrary (that is, not necessarily balanced) strings. The first idea aims to transform strings into permutations, using the match-and-prune model in ... More


The configuration model

Mark Newman

in Networks

Published in print:
2018
Published Online:
October 2018
ISBN:
9780198805090
eISBN:
9780191843235
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/oso/9780198805090.003.0012
Subject:
Physics, Theoretical, Computational, and Statistical Physics

A discussion of the most fundamental of network models, the configuration model, which is a random graph model of a network with a specified degree sequence. Following a definition of the model a ... More


Community structure

Mark Newman

in Networks

Published in print:
2018
Published Online:
October 2018
ISBN:
9780198805090
eISBN:
9780191843235
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/oso/9780198805090.003.0014
Subject:
Physics, Theoretical, Computational, and Statistical Physics

A discussion of community structure in networks and methods for its detection. The chapter begins with an introduction to the idea of community structure, followed by descriptions of a range of ... More


Graphs on structured spaces

A.C.C. Coolen, A. Annibale, and E.S. Roberts

in Generating Random Networks and Graphs

Published in print:
2017
Published Online:
May 2017
ISBN:
9780198709893
eISBN:
9780191780172
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/oso/9780198709893.003.0010
Subject:
Physics, Theoretical, Computational, and Statistical Physics

This chapter moves beyond viewing nodes as homogeneous dots set on a plane. To introduce more complicated underlying space, multiplex networks (which are defined with layers of interaction on the ... More


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