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Perspectives

ZIHENG YANG

in Computational Molecular Evolution

Published in print:
2006
Published Online:
April 2010
ISBN:
9780198567028
eISBN:
9780191728280
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198567028.003.0010
Subject:
Biology, Evolutionary Biology / Genetics

This chapter discusses current challenges and future perspectives of the field. Topics covered include theoretical issues in phylogeny reconstruction, computational issues in analysis of large and ... More


The limits of conventional cladistic analysis

Jerrold I. Davis, Kevin C. Nixon, and Damon P. Little

in Parsimony, Phylogeny, and Genomics

Published in print:
2006
Published Online:
September 2007
ISBN:
9780199297306
eISBN:
9780191713729
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199297306.003.0007
Subject:
Biology, Evolutionary Biology / Genetics

Software for cladistic analysis has been widely available for more than twenty years, and a series of advances made during this time have facilitated the analysis of matrices of ever-increasing size. ... More


One-Move Puzzles with Mathematical Content

Anany Levitin

in The Mathematics of Various Entertaining Subjects: Research in Recreational Math

Published in print:
2015
Published Online:
October 2017
ISBN:
9780691164038
eISBN:
9781400881338
Item type:
chapter
Publisher:
Princeton University Press
DOI:
10.23943/princeton/9780691164038.003.0002
Subject:
Mathematics, History of Mathematics

This chapter provides a survey of mathematical puzzles solvable in one move. The types considered are divination puzzles, weighing puzzles, rearrangement puzzles, dissection puzzles, and folding ... More


Cytogenetics and large scale structural genomic variation

Julian C. Knight

in Human Genetic Diversity: Functional Consequences for Health and Disease

Published in print:
2009
Published Online:
September 2009
ISBN:
9780199227693
eISBN:
9780191711015
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199227693.003.0003
Subject:
Biology, Evolutionary Biology / Genetics, Disease Ecology / Epidemiology

Cytogenetics has played a fundamental role in advancing our understanding of human genetic variation. Advances in this field are set in a historical context, describing the microscopically visible ... More


Combinatorics of Genome Rearrangements

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Stéphane Vialette

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
book
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.001.0001
Subject:
Mathematics, Mathematical Biology

From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs ... More


Richard Held

Larry R. Squire

in The History of Neuroscience in Autobiography Volume 6

Published in print:
2009
Published Online:
May 2009
ISBN:
9780195380101
eISBN:
9780199864362
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780195380101.003.0005
Subject:
Neuroscience, History of Neuroscience

This chapter presents an autobiography of Richard Held. Held and his colleagues studied the effects of sensory rearrangement and have modeled the adaptive processes that reduce, and sometimes ... More


Graph-Theoretic and Linear Algebra Formulations

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0006
Subject:
Mathematics, Mathematical Biology

This chapter demonstrates the expansion of genome rearrangement problems to a wide mathematical field, including long-standing problems in algebra. It discusses simple permutations and the ... More


Cycles of a Permutation

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0011
Subject:
Mathematics, Mathematical Biology

This chapter begins by providing a model for multichromosomal circular genomes. It then presents a generalization to signed genomes and some results.


Software

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0015
Subject:
Mathematics, Mathematical Biology

This chapter describes software that implements some of the algorithms mentioned or discussed in this book. It begins in Section 15.1 with tools that analyze rearrangements between two genomes using ... More


Open Problems

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette

in Combinatorics of Genome Rearrangements

Published in print:
2009
Published Online:
August 2013
ISBN:
9780262062824
eISBN:
9780262258753
Item type:
chapter
Publisher:
The MIT Press
DOI:
10.7551/mitpress/9780262062824.003.0016
Subject:
Mathematics, Mathematical Biology

The variety of genome rearrangement problems is huge and is increasing every year. While it is possible to design many other variants that have yet to be studied, among the most studied variants, ... More


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