## Perspectives

*ZIHENG YANG*

### in Computational Molecular Evolution

- Published in print:
- 2006
- Published Online:
- April 2010
- ISBN:
- 9780198567028
- eISBN:
- 9780191728280
- Item type:
- chapter

- Publisher:
- Oxford University Press
- DOI:
- 10.1093/acprof:oso/9780198567028.003.0010
- Subject:
- Biology, Evolutionary Biology / Genetics

This chapter discusses current challenges and future perspectives of the field. Topics covered include theoretical issues in phylogeny reconstruction, computational issues in analysis of large and ... More

## The limits of conventional cladistic analysis

*Jerrold I. Davis, Kevin C. Nixon, and Damon P. Little*

### in Parsimony, Phylogeny, and Genomics

- Published in print:
- 2006
- Published Online:
- September 2007
- ISBN:
- 9780199297306
- eISBN:
- 9780191713729
- Item type:
- chapter

- Publisher:
- Oxford University Press
- DOI:
- 10.1093/acprof:oso/9780199297306.003.0007
- Subject:
- Biology, Evolutionary Biology / Genetics

Software for cladistic analysis has been widely available for more than twenty years, and a series of advances made during this time have facilitated the analysis of matrices of ever-increasing size. ... More

## One-Move Puzzles with Mathematical Content

*Anany Levitin*

### in The Mathematics of Various Entertaining Subjects: Research in Recreational Math

- Published in print:
- 2015
- Published Online:
- October 2017
- ISBN:
- 9780691164038
- eISBN:
- 9781400881338
- Item type:
- chapter

- Publisher:
- Princeton University Press
- DOI:
- 10.23943/princeton/9780691164038.003.0002
- Subject:
- Mathematics, History of Mathematics

This chapter provides a survey of mathematical puzzles solvable in one move. The types considered are divination puzzles, weighing puzzles, rearrangement puzzles, dissection puzzles, and folding ... More

## Cytogenetics and large scale structural genomic variation

*Julian C. Knight*

### in Human Genetic Diversity: Functional Consequences for Health and Disease

- Published in print:
- 2009
- Published Online:
- September 2009
- ISBN:
- 9780199227693
- eISBN:
- 9780191711015
- Item type:
- chapter

- Publisher:
- Oxford University Press
- DOI:
- 10.1093/acprof:oso/9780199227693.003.0003
- Subject:
- Biology, Evolutionary Biology / Genetics, Disease Ecology / Epidemiology

Cytogenetics has played a fundamental role in advancing our understanding of human genetic variation. Advances in this field are set in a historical context, describing the microscopically visible ... More

## Combinatorics of Genome Rearrangements

*Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Stéphane Vialette*

- Published in print:
- 2009
- Published Online:
- August 2013
- ISBN:
- 9780262062824
- eISBN:
- 9780262258753
- Item type:
- book

- Publisher:
- The MIT Press
- DOI:
- 10.7551/mitpress/9780262062824.001.0001
- Subject:
- Mathematics, Mathematical Biology

From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs ... More

## Richard Held

*Larry R. Squire*

### in The History of Neuroscience in Autobiography Volume 6

- Published in print:
- 2009
- Published Online:
- May 2009
- ISBN:
- 9780195380101
- eISBN:
- 9780199864362
- Item type:
- chapter

- Publisher:
- Oxford University Press
- DOI:
- 10.1093/acprof:oso/9780195380101.003.0005
- Subject:
- Neuroscience, History of Neuroscience

This chapter presents an autobiography of Richard Held. Held and his colleagues studied the effects of sensory rearrangement and have modeled the adaptive processes that reduce, and sometimes ... More

## Graph-Theoretic and Linear Algebra Formulations

*Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette*

### in Combinatorics of Genome Rearrangements

- Published in print:
- 2009
- Published Online:
- August 2013
- ISBN:
- 9780262062824
- eISBN:
- 9780262258753
- Item type:
- chapter

- Publisher:
- The MIT Press
- DOI:
- 10.7551/mitpress/9780262062824.003.0006
- Subject:
- Mathematics, Mathematical Biology

This chapter demonstrates the expansion of genome rearrangement problems to a wide mathematical field, including long-standing problems in algebra. It discusses simple permutations and the ... More

## Cycles of a Permutation

*Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette*

### in Combinatorics of Genome Rearrangements

- Published in print:
- 2009
- Published Online:
- August 2013
- ISBN:
- 9780262062824
- eISBN:
- 9780262258753
- Item type:
- chapter

- Publisher:
- The MIT Press
- DOI:
- 10.7551/mitpress/9780262062824.003.0011
- Subject:
- Mathematics, Mathematical Biology

This chapter begins by providing a model for multichromosomal circular genomes. It then presents a generalization to signed genomes and some results.

## Software

*Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette*

### in Combinatorics of Genome Rearrangements

- Published in print:
- 2009
- Published Online:
- August 2013
- ISBN:
- 9780262062824
- eISBN:
- 9780262258753
- Item type:
- chapter

- Publisher:
- The MIT Press
- DOI:
- 10.7551/mitpress/9780262062824.003.0015
- Subject:
- Mathematics, Mathematical Biology

This chapter describes software that implements some of the algorithms mentioned or discussed in this book. It begins in Section 15.1 with tools that analyze rearrangements between two genomes using ... More

## Open Problems

*Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Steéphane Vialette*

### in Combinatorics of Genome Rearrangements

- Published in print:
- 2009
- Published Online:
- August 2013
- ISBN:
- 9780262062824
- eISBN:
- 9780262258753
- Item type:
- chapter

- Publisher:
- The MIT Press
- DOI:
- 10.7551/mitpress/9780262062824.003.0016
- Subject:
- Mathematics, Mathematical Biology

The variety of genome rearrangement problems is huge and is increasing every year. While it is possible to design many other variants that have yet to be studied, among the most studied variants, ... More