Jump to ContentJump to Main Navigation

You are looking at 1-10 of 14 items

  • Keywords: phylogenetic trees x
Clear All Modify Search

View:

The logic of the data matrix in phylogenetic analysis

Brent D. Mishler

in Parsimony, Phylogeny, and Genomics

Published in print:
2006
Published Online:
September 2007
ISBN:
9780199297306
eISBN:
9780191713729
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199297306.003.0004
Subject:
Biology, Evolutionary Biology / Genetics

The process of phylogenetic analysis inherently consists of two phases. First a data matrix is assembled, and then a phylogenetic tree is inferred from that matrix. There is obviously some feedback ... More


Basics in Molecular Evolution

Xun Gu

in Statistical Theory and Methods for Evolutionary Genomics

Published in print:
2010
Published Online:
January 2011
ISBN:
9780199213269
eISBN:
9780191594762
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199213269.003.0001
Subject:
Biology, Biomathematics / Statistics and Data Analysis / Complexity Studies

Molecular evolution is the study of the process of evolution at the level of DNA, RNA, and proteins, in which the neutral or nearly neutral evolution model has provided the theoretical basis. Yet, ... More


 Creationist Purpose and Irreducible Complexity Rebutted

Paul F. Lurquin and Linda Stone

in Evolution and Religious Creation Myths: How Scientists Respond

Published in print:
2007
Published Online:
September 2007
ISBN:
9780195315387
eISBN:
9780199785674
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780195315387.003.0003
Subject:
Religion, Religion and Society

This chapter rebuts irreducible complexity and creationism by explaining the reliability of dating techniques as well as sophisticated laboratory techniques that allow researchers to synthesize ... More


Probabilistic ancestral sequences based on the Markovian model of evolution: algorithms and applications

Gina M. Cannarozzi, Adrian Schneider, and Gaston H. Gonnet

in Ancestral Sequence Reconstruction

Published in print:
2007
Published Online:
September 2008
ISBN:
9780199299188
eISBN:
9780191714979
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199299188.003.0005
Subject:
Biology, Evolutionary Biology / Genetics

A probabilistic sequence (PS) is a sequence in which each position instead of having a single character (amino acid, nucleotide, or codon), has a vector describing the probability of each symbol ... More


Conclusion and a way forward

David A. Liberles

in Ancestral Sequence Reconstruction

Published in print:
2007
Published Online:
September 2008
ISBN:
9780199299188
eISBN:
9780191714979
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199299188.003.0020
Subject:
Biology, Evolutionary Biology / Genetics

This concluding chapter discusses the various issues raised in the course of the book and suggests a way forward for readers attempting ancestral sequence reconstruction. Ancestral sequence ... More


The Promise and Challenges of Introducing Tree Thinking into Evolution Education

Kefyn M. Catley, Laura R. Novick, and Daniel J. Funk

in Evolution Challenges: Integrating Research and Practice in Teaching and Learning about Evolution

Published in print:
2012
Published Online:
September 2012
ISBN:
9780199730421
eISBN:
9780199949557
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199730421.003.0005
Subject:
Psychology, Developmental Psychology, Cognitive Psychology

Engaging in tree thinking (using phylogenetic diagrams to interpret and infer historical processes) is a prerequisite for understanding macroevolution. Tree thinking has become increasingly important ... More


Holocene extinctions and the loss of feature diversity

Arne Ø. Mooers, Simon J. Goring, Samuel T. Turvey, and Tyler S. Kuhn

in Holocene Extinctions

Published in print:
2009
Published Online:
September 2009
ISBN:
9780199535095
eISBN:
9780191715754
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780199535095.003.0014
Subject:
Biology, Evolutionary Biology / Genetics

Each species can be considered to possess a set of unique characters which comprise its feature diversity — the diversity that would be lost when that species goes extinct. Biodiversity is unevenly ... More


Phylogeny reconstruction: overview

ZIHENG YANG

in Computational Molecular Evolution

Published in print:
2006
Published Online:
April 2010
ISBN:
9780198567028
eISBN:
9780191728280
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198567028.003.0003
Subject:
Biology, Evolutionary Biology / Genetics

This chapter provides an overview of phylogeny reconstruction methods. It introduces some basic concepts used to describe trees and discusses general features of tree-reconstruction methods. Distance ... More


FOURIER ANALYSIS ON FINITE ABELIAN GROUPS: SOME GRAPHICAL APPLICATIONS

Andrew Goodall

in Combinatorics, Complexity, and Chance: A Tribute to Dominic Welsh

Published in print:
2007
Published Online:
September 2007
ISBN:
9780198571278
eISBN:
9780191718885
Item type:
chapter
Publisher:
Oxford University Press
DOI:
10.1093/acprof:oso/9780198571278.003.0007
Subject:
Mathematics, Probability / Statistics

This article reviews basic techniques of Fourier analysis on a finite abelian group Q, with subsequent applications in graph theory. These include evaluations of the Tutte polynomial of a graph G in ... More


The Gilded Age of Evolutionary Trees

J. David Archibald

in Aristotle's Ladder, Darwin's Tree: The Evolution of Visual Metaphors for Biological Order

Published in print:
2014
Published Online:
November 2015
ISBN:
9780231164122
eISBN:
9780231537667
Item type:
chapter
Publisher:
Columbia University Press
DOI:
10.7312/columbia/9780231164122.003.0005
Subject:
Biology, Evolutionary Biology / Genetics

This chapter examines how tree-like representations took on new meanings as an understanding of genetics and the importance of population-based studies emerged. Before Charles Darwin's On the Origin ... More


View: